Engines

Statistical backends for differential expression testing. Custom engines can be created by subclassing DEEngineBase.

Engine Factory

get_engine_instance(engine_name)

Create an instance of the specified differential expression engine.

Base Class

DEEngineBase()

Abstract base class for differential expression engines.

Built-in Engines

AnovaEngine()	Test nested regression models using ANOVA F-test.
PyDESeq2Engine()	DESeq2 engine using PyDESeq2 (pure Python).