# Installation

You need to have Python 3.11 or newer installed on your system.

## PyPI (stable)

```bash
pip install scbulkde
```

## Development (latest)

```bash
pip install git+https://github.com/quadbio/scBulkDE.git@main
```

## Dependencies

scBulkDE automatically installs the following core dependencies:

- [anndata](https://anndata.readthedocs.io/)
- [formulaic](https://matthewwardrop.github.io/formulaic/)
- [pydeseq2](https://pydeseq2.readthedocs.io/)
- [statsmodels](https://www.statsmodels.org/)
- [rich](https://rich.readthedocs.io/)
- [tqdm](https://tqdm.github.io/)