Index A | C | D | E | F | G | L | M | N | P | Q | R | S | U A adata_sub (scbulkde.PseudobulkResult attribute), [1] AnovaEngine (class in scbulkde.engines) C categorical_covariates (scbulkde.PseudobulkResult attribute), [1] collapsed (scbulkde.PseudobulkResult attribute) continuous_aggregation (scbulkde.PseudobulkResult attribute), [1] continuous_covariates (scbulkde.PseudobulkResult attribute), [1] D de() (in module scbulkde.tl) DEEngineBase (class in scbulkde.engines) DEResult (class in scbulkde) design (scbulkde.DEResult attribute), [1] design_formula (scbulkde.PseudobulkResult attribute), [1] design_matrix (scbulkde.PseudobulkResult attribute), [1] E engine (scbulkde.DEResult attribute), [1] F fallback_used (scbulkde.DEResult attribute) G get_engine_instance() (in module scbulkde.engines) get_repetition_results() (scbulkde.DEResult method) get_repetition_stats() (scbulkde.DEResult method) group_key (scbulkde.PseudobulkResult attribute), [1] group_key_internal (scbulkde.PseudobulkResult attribute), [1] grouped (scbulkde.PseudobulkResult attribute), [1] L layer (scbulkde.PseudobulkResult attribute), [1] layer_aggregation (scbulkde.PseudobulkResult attribute), [1] M min_cells (scbulkde.PseudobulkResult attribute), [1] min_coverage (scbulkde.PseudobulkResult attribute), [1] min_fraction (scbulkde.PseudobulkResult attribute), [1] module scbulkde.engines scbulkde.pp scbulkde.tl N n_cells (scbulkde.PseudobulkResult attribute), [1] n_genes (scbulkde.DEResult attribute) n_repetitions (scbulkde.DEResult attribute), [1] n_samples (scbulkde.PseudobulkResult attribute) n_significant (scbulkde.DEResult attribute) name (scbulkde.engines.AnovaEngine attribute) (scbulkde.engines.DEEngineBase attribute) (scbulkde.engines.PyDESeq2Engine attribute) P pb_counts (scbulkde.PseudobulkResult attribute), [1] pseudobulk() (in module scbulkde.pp) PseudobulkResult (class in scbulkde) PyDESeq2Engine (class in scbulkde.engines) Q qualify_strategy (scbulkde.PseudobulkResult attribute), [1] query (scbulkde.DEResult attribute), [1] (scbulkde.PseudobulkResult attribute), [1] R rank_genes_groups() (in module scbulkde.tl) reference (scbulkde.DEResult attribute), [1] (scbulkde.PseudobulkResult attribute), [1] repetition_results (scbulkde.DEResult attribute), [1] repetition_stats (scbulkde.DEResult attribute), [1] results (scbulkde.DEResult attribute), [1] run() (scbulkde.engines.AnovaEngine method) (scbulkde.engines.DEEngineBase method) (scbulkde.engines.PyDESeq2Engine method) S sample_table (scbulkde.PseudobulkResult attribute), [1] scbulkde.engines module scbulkde.pp module scbulkde.tl module set_log_level() (in module scbulkde.ut) set_performance_enabled() (in module scbulkde.ut) strata (scbulkde.PseudobulkResult attribute), [1] summary() (scbulkde.DEResult method) U used_pseudoreplicates (scbulkde.DEResult attribute), [1] used_single_cell (scbulkde.DEResult attribute), [1]